[one-users] Upgrade 4.6 to 4.8 (beta) - onedb fsck report an error

Carlos Martín Sánchez cmartin at opennebula.org
Wed Jul 30 08:16:30 PDT 2014 

Thanks a lot, we will fix it for the final release:
http://dev.opennebula.org/issues/3120

Cheers.

--
Carlos Martín, MSc
Project Engineer
OpenNebula - Flexible Enterprise Cloud Made Simple
www.OpenNebula.org | cmartin at opennebula.org | @OpenNebula
<http://twitter.com/opennebula> <cmartin at opennebula.org>


On Wed, Jul 30, 2014 at 3:14 AM, Anandharaj Subramaniam <
anandharaj.maniam at mimos.my> wrote:

>  Hi,
>
>
>
> Below is the output from debug.
>
>
>
> [oneadmin at opennebula ~]$ ruby -d /usr/bin/onedb fsck -f -S localhost -u
> oneadmin -p ****** -d opennebula
>
> /usr/lib/one/ruby/cli/command_parser.rb:434: warning: ambiguous first
> argument; put parentheses or even spaces
>
> /usr/lib/one/ruby/cli/command_parser.rb:496: warning: ambiguous first
> argument; put parentheses or even spaces
>
> /usr/lib/one/ruby/cli/command_parser.rb:507: warning: ambiguous first
> argument; put parentheses or even spaces
>
> /usr/lib/one/ruby/cli/command_parser.rb:524: warning: ambiguous first
> argument; put parentheses or even spaces
>
> /usr/lib/one/ruby/cli/command_parser.rb:543: warning: ambiguous first
> argument; put parentheses or even spaces
>
> /usr/lib/one/ruby/cli/command_parser.rb:572: warning: ambiguous first
> argument; put parentheses or even spaces
>
> /usr/lib/one/ruby/onedb/onedb.rb:30: warning: ambiguous first argument;
> put parentheses or even spaces
>
> /usr/lib/one/ruby/onedb/onedb.rb:40: warning: ambiguous first argument;
> put parentheses or even spaces
>
> /usr/lib/one/ruby/onedb/onedb_backend.rb:24: warning: ambiguous first
> argument; put parentheses or even spaces
>
> Exception `LoadError' at /usr/lib/ruby/site_ruby/1.8/rubygems.rb:1113 - no
> such file to load -- rubygems/defaults/operating_system
>
> Exception `LoadError' at
> /usr/lib/ruby/site_ruby/1.8/rubygems/config_file.rb:50 - no such file to
> load -- Win32API
>
> Exception `LoadError' at
> /usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb:31 - no such file to
> load -- sequel
>
> Exception `NoMethodError' at /usr/lib/ruby/1.8/rational.rb:78 - undefined
> method `gcd' for Rational(1, 2):Rational
>
> /usr/lib/one/ruby/opennebula/xml_pool.rb:25: warning: method redefined;
> discarding old initialize
>
> /usr/lib/one/ruby/opennebula/xml_pool.rb:31: warning: method redefined;
> discarding old each_element
>
> Exception `LoadError' at
> /usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb:31 - no such file to
> load -- nokogiri
>
> Exception `LoadError' at
> /usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb:31 - no such file to
> load -- ox
>
> Exception `LoadError' at
> /usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb:31 - no such file to
> load -- xmlparser
>
> Exception `LoadError' at
> /usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb:38 - no such file to
> load -- xmlparser
>
> /usr/lib/one/ruby/opennebula/host.rb:124: warning: ambiguous first
> argument; put parentheses or even spaces
>
> Exception `LoadError' at
> /usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb:31 - no such file to
> load -- mysqlplus
>
> Exception `LoadError' at
> /usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb:38 - no such file to
> load -- mysqlplus
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> Exception `Errno::ECONNREFUSED' at /usr/lib/ruby/1.8/net/http.rb:560 -
> Connection refused - connect(2)
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> MySQL dump stored in /var/lib/one/mysql_localhost_opennebula.sql
>
> Use 'onedb restore' or restore the DB using the mysql command:
>
> mysql -u user -h server -P port db_name < backup_file
>
>
>
>
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/query.rb:80:
> warning: instance variable @columns not initialized
>
> /usr/lib/ruby/gems/1.8/gems/sequel-4.1.1/lib/sequel/dataset/actions.rb:141:
> warning: instance variable @row_proc not initialized
>
> Exception `NoMethodError' at /usr/lib/one/ruby/onedb/fsck.rb:623 -
> undefined method `[]' for nil:NilClass
>
> undefined method `[]' for nil:NilClass
>
> Error running fsck version 4.6.0
>
> The database will be restored
>
> Exception `Errno::ECONNREFUSED' at /usr/lib/ruby/1.8/net/http.rb:560 -
> Connection refused - connect(2)
>
> MySQL DB opennebula at localhost restored.
>
> [oneadmin at opennebula ~]$
>
>
>
>
>
> --
>
> Regards,
>
> Anandharaj
>
>
>
> *From:* Carlos Martín Sánchez [mailto:cmartin at opennebula.org]
> *Sent:* Friday, July 25, 2014 4:54 PM
> *To:* Anandharaj Subramaniam
> *Cc:* users at lists.opennebula.org
> *Subject:* Re: [one-users] Upgrade 4.6 to 4.8 (beta) - onedb fsck report
> an error
>
>
>
> Hi Anandharaj,
>
>
>
> Can you please try the onedb command again, with the debug flag?
>
>
>
> ruby -d `which onedb` fsck ....
>
>
>
> Thank you.
>
>
>
>
>
>
>   --
>
> Carlos Martín, MSc
> Project Engineer
>
> OpenNebula - Flexible Enterprise Cloud Made Simple
>
> www.OpenNebula.org | cmartin at opennebula.org | @OpenNebula
> <http://twitter.com/opennebula>
>
>
>
> On Fri, Jul 25, 2014 at 4:47 AM, Anandharaj Subramaniam <
> anandharaj.maniam at mimos.my> wrote:
>
> Hi,
>
>
>
> I have followed the documentation to upgrade my test OpenNebula from 4.6.2
> to the 4.8 (beta 1).  When I run the onedb fsck, I got an error.
>
>
>
> [oneadmin at opennebula ~]$ onedb upgrade -v -u oneadmin -d opennebula
>
> MySQL Password:
>
> Version read:
>
> Shared tables 4.6.0 : OpenNebula 4.6.2 daemon bootstrap
>
> Local tables  4.5.80 : OpenNebula 4.6.2 daemon bootstrap
>
>
>
> MySQL dump stored in /var/lib/one/mysql_localhost_opennebula.sql
>
> Use 'onedb restore' or restore the DB using the mysql command:
>
> mysql -u user -h server -P port db_name < backup_file
>
>
>
>
>
> >>> Running migrators for shared tables
>
> Database already uses version 4.6.0
>
>
>
> >>> Running migrators for local tables
>
>   > Running migrator /usr/lib/one/ruby/onedb/local/4.5.80_to_4.7.80.rb
>
>   > Done in 0.27s
>
>
>
> Database migrated from 4.5.80 to 4.7.80 (OpenNebula 4.7.80) by onedb
> command.
>
>
>
> Total time: 0.27s
>
>
>
>
>
> [oneadmin at opennebula ~]$ onedb fsck -S localhost -u oneadmin  -d
> opennebula
>
> MySQL dump stored in /var/lib/one/mysql_localhost_opennebula.sql
>
> Use 'onedb restore' or restore the DB using the mysql command:
>
> mysql -u user -h server -P port db_name < backup_file
>
>
>
>
>
> *undefined method `[]' for nil:NilClass*
>
> Error running fsck version 4.6.0
>
> The database will be restored
>
> MySQL DB opennebula at localhost restored.
>
>
>
>
>
> --
>
> Regards,
>
> Anandharaj
>
>
>
>
>  ------------------------------
>
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>  This e-mail (including any attachments) is for the addressee(s) only and
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>  MIMOS Berhad is a research and development institution under the purview
> of the Malaysian Ministry of Science, Technology and Innovation. Opinions,
> conclusions and other information in this e-mail that do not relate to the
> official business of MIMOS Berhad and/or its subsidiaries shall be
> understood as neither given nor endorsed by MIMOS Berhad and/or its
> subsidiaries and neither MIMOS Berhad nor its subsidiaries accepts
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